Licenses being used up when pushing updates to the site thus showing the site as not purchased.

We are having problems with a site that we built from a WordPress theme we purchased from Envato/Pinsupreme. It is the Neptune theme. Every time we do a code update it spins up another server URL and takes one of our licenses and eventually we have the pink bar on the site that says the site is not purchased. Has anyone experienced this before? I am looking for a solution to this.